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Publications
Community Detection Using Graph Attention Networks Clustering Algorithm

Authors : Pratiti Bhadra, Ippatapu Venkata Srichandra

Publications
Comparison of Biomolecular Force Fields for Alkanethiol Self-Assembled Monolayer Simulations

Authors : Shirley W.I. Siu. J, Pratiti Bhadra

Publications
How does the presence/absence of Sec63 affect the Sec61α conformations in yeast?

Authors : Dr. Pratiti Bhadra, Volkhard Helms , Lalitha Yadhanapudi, Karin R¨omisch

Publications
Molecular Dynamics Information Improves cis-Peptide-Based Function Annotation of Proteins

Authors : Sreetama Das, Pratiti Bhadra, Suryanarayanarao Ramakumar, Debnath Pal

Publications
AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest

Authors : Pratiti Bhadra, Jielu Yan, Jinyan Li, Simon Fong, Shirley W. I. Siu

Publications
A Refined Empirical Force Field to Model Protein-SAM Interactions Based on AMBER14 and GAFF

Authors : Pratiti Bhadra, Shirley W I Siu

Publications
Deep-AmPEP30: Improve short antimicrobial peptides prediction with deep learning

Authors : Jielu Yan, Pratiti Bhadra, Ang Li, Pooja Sethiya, Longguang Qin, Hio Kuan Tai, Koon Ho Wong, Shirley W. I. Siu

Publications
A new Ca atom-based force-field for coarse-grained protein dynamics correlated
Publications
Protein dynamics and function correlation using a new knowledge based coarse grained force field

Authors : Pratiti Bhadra, Dr. Debanth Pal

Publications
Modulating the conformation of the Sec61 protein translocation pore
Publications
Molecular Modeling of Signal Peptide Recognition by Eukaryotic Sec Complexes

Authors : Sreetama Das, Pratiti Bhadra, S. Ramakumar, Debnath Pal

Publications
De novo inference of protein function from coarse-grained dynamics

Authors : Pratiti Bhadra, Debnath Pal

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