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Dr. P. K. Krishnan Namboori

Associate Professor, Computational Engineering and Networking, Coimbatore | Adjunct Faculty, School of Biotechnology, Amritapuri

Qualification: Ph.D
n_krishnan@cb.amrita.edu
Research Interest: Computational Chemistry, Computational Material Sciences, Computational Nanotechnology, Drug Design & Delivery Systems
Nature of Association: Regular

Bio

Dr. P. K. Krishnan Namboori currently serves as an Associate Professor at the Center for Excellence in Computational Engineering and Networking (CEN) and In-charge of Computational Chemistry Group, Amrita School of Engineering, Amrita VishwaVidyapeetham, Coimbatore campus. He pursued his Ph. D. in Computational Drug Designing from Amrita VishwaVidyapeetham in the year 2010. He is also an Adjuncy Faculty at the School of Biotechnology at Amritapuri Campus. He, focuses on research activities related to theory and computer simulation of chemical and molecular processes. The computational techniques range from ‘ab initio’ electronic structure methods through classical molecular simulation to mesoscale simulation. A number international journal publications, conference proceedings and one international book are to his credit. He is assisted by three research fellows and a number of project students.

Publications

Journal Article

Year : 2019

In Silico Discovery of Novel Ligands for Anti-Tubercular Targets Using Computed Aided Drug Design

Cite this Research Publication : V. Bhaskar, Namboori, K., and Dr. Leena K. Pappachen, “In Silico Discovery of Novel Ligands for Anti-Tubercular Targets Using Computed Aided Drug Design”, Research Journal of Pharmacy and Technology, vol. 12, no. 11, pp. 5646-5650, 2019.

Year : 2019

Glutathione Derivative as Potential Drugs for Colorectal Cancer Resulted by APC Mutations

Cite this Research Publication : S. James, P. K. Krishnan Namboori, and Dr. Leena K. Pappachen, “Glutathione Derivative as Potential Drugs for Colorectal Cancer Resulted by APC Mutations”, Research Journal of Pharmacy and Technology, vol. 12, no. 8, 2019.

Publisher : Research Journal of Pharmacy and Technology

Year : 2017

Evaluation of colorectal cancer (CRC) epidemiology a pharmacogenomic approach

Cite this Research Publication : A. Ma HimaVyshnavi, Anand, C. Lb, Deepak, O. Mc, and P. K. Krishnan Namboori, “Evaluation of colorectal cancer (CRC) epidemiology a pharmacogenomic approach”, Journal of Young Pharmacists, vol. 9, pp. 36-39, 2017.

Publisher : Journal of Young Pharmacists

Year : 2017

Comprehensive strategy for the design of precision drugs and identification of genetic signature behind proneness of the disease-a pharmacogenomic approach.

Cite this Research Publication : P. M. Iyer, Karthikeyan, S., P Kumar, S., and Namboori, P. K. Krishnan, “Comprehensive strategy for the design of precision drugs and identification of genetic signature behind proneness of the disease-a pharmacogenomic approach.”, Funct Integr Genomics, vol. 17, no. 4, pp. 375-385, 2017.

Publisher : Funct Integr Genomics

Year : 2017

Comprehensive strategy for the design of precision drugs and identification of genetic signature behind proneness of the disease—a pharmacogenomic approach

Cite this Research Publication : P. M. Iyer, Karthikeyan, S., P. Kumar, S., and P. K. Krishnan Namboori, “Comprehensive strategy for the design of precision drugs and identification of genetic signature behind proneness of the disease—a pharmacogenomic approach”, Functional and Integrative Genomics, pp. 1-11, 2017

Publisher : Functional and Integrative Genomics

Year : 2016

Retrometabolic approach for designing personalized anti- cancer drug molecules for controlling breast cancer resulted by BRCA1 mutations

Cite this Research Publication : P. M. Iyer, P. Kumar, S., Shanmugam, K., and P. K. Krishnan Namboori, “Retrometabolic approach for designing personalized anti- cancer drug molecules for controlling breast cancer resulted by BRCA1 mutations”, Current Pharmacogenomics and Personalized Medicine (Formerly Current Pharmacogenomics), vol. 14, no. 1, pp. 56 - 64, 2016

Publisher : Current Pharmacogenomics and Personalized Medicine (Formerly Current Pharmacogenomics) .

Year : 2016

Prediction of epigenetic variations in alzheimer’s disease identification of ethnic variants through pharmacogenomic approach

Cite this Research Publication : PaSanjay Kumar, Karthikeyan, Sa, Iyer, P. Mb, and P. K. Krishnan Namboori, “Prediction of epigenetic variations in alzheimer's disease identification of ethnic variants through pharmacogenomic approach”, Research Journal of Pharmaceutical, Biological and Chemical Sciences, vol. 7, pp. 2742-2745, 2016

Publisher : Research Journal of Pharmaceutical, Biological and Chemical Sciences.

Year : 2016

Brca1 responsiveness towards breast cancer-a population-wise pharmacogenomic analysis

Cite this Research Publication : P. Mab Iyer, Kumar, PbSanjay, Karthikeyan, Sb, and P. K. Krishnan Namboori, “Brca1 responsiveness towards breast cancer-a population-wise pharmacogenomic analysis”, International Journal of Pharmacy and Pharmaceutical Sciences, vol. 8, pp. 267-270, 2016

Publisher : International Journal of Pharmacy and Pharmaceutical Sciences.

Year : 2015

Perusal of Mbl2 gene -Susceptibility to tuberculosis in different Indian populations

Cite this Research Publication : C. V. Umesh, Jamsheer, A. M., Alex, P. M., and P. K. Krishnan Namboori, “Perusal of Mbl2 gene -Susceptibility to tuberculosis in different Indian populations”, Journal of Applied Pharmaceutical Science, vol. 5, no. 9, pp. 097-099, 2015.

Publisher : Journal of Applied Pharmaceutical Science, Open Science Publishers LLP Inc

Year : 2015

Insilico modeling of chitosan as a drug delivery system

Cite this Research Publication : Ann Elizabeth Silviya, Kavitha G., Narayanankutty Karuppath, and P. K. Krishnan Namboori, “Insilico modeling of chitosan as a drug delivery system”, International Journal of Drug Delivery, vol. 7, no. 1, pp. 27-31, 2015

Publisher : International Journal of Drug Delivery, Advanced Research Journals

Year : 2015

Efficiency of Chitosan Drug Delivery System-A Computational Analysis

Cite this Research Publication : Ann Elizabeth Silviya, Kavitha G., Narayanankutty Karuppath, and P. K. Krishnan Namboori, “Efficiency of Chitosan Drug Delivery System-A Computational Analysis”, International Journal of Current Research, vol. 7, no. 6, 2015.

Publisher : International Journal of Current Research

Year : 2013

Pharmacogenomic analysis of individual variation in prostate cancer

Cite this Research Publication : Sukumaran, Ja, ,, ,, and P. K. Krishnan Namboori, “Pharmacogenomic analysis of individual variation in prostate cancer”, International Journal of Research in Pharmaceutical Sciences, vol. 4, pp. 70-72, 2013

Publisher : International Journal of Research in Pharmaceutical Sciences

Year : 2012

De Novo designing of HDAC inhibitors in cancer therapy

Cite this Research Publication : C. P. Anju, Anusooya, N. J., Deeasree, M., Deepak, O. M., and P. K. Krishnan Namboori, “De Novo designing of HDAC inhibitors in cancer therapy”, International Journal of Pharmaceutical Science and Health Care, vol. 2, pp. 59–66, 2012

Publisher : International Journal of Pharmaceutical Science and Health Care

Year : 2011

PRE-TRANSCRIPTIONAL GENE SILENCING TECHNIQUE FOR CONTROLLING SKIN CANCER

Cite this Research Publication : A. Noushadali, Parimalam, B., R Devi, R., Shilpa, S., A Kumar, S., and P. K. Krishnan Namboori, “PRE-TRANSCRIPTIONAL GENE SILENCING TECHNIQUE FOR CONTROLLING SKIN CANCER”, International Journal of Pharmaceutical Science and Research, vol. 2, no. 5, pp. 1293-1297, 2011

Publisher : International Journal of Pharmaceutical Science and Research

Year : 2011

Insilico modeling and simulation of magnetic nanoparticles for the biological cell isolation technique

Cite this Research Publication : K. V. Gopal, Premkumar, P., Gopakumar, D., P. K. Krishnan Namboori, and Sabarish Narayanan B., “Insilico modeling and simulation of magnetic nanoparticles for the biological cell isolation technique”, International Journal of Nanoscience, vol. 10, no. 1-2, pp. 323-327, 2011.

Publisher : International Journal of Nanoscience

Year : 2011

Electrical conductivity and thermodynamic stability of single walled carbon nanotube using first principles

Cite this Research Publication : A. Ranganath, Ashish, G., K Gopal, V., Narayanankutty Karuppath, Gopakumar, D., and P. K. Krishnan Namboori, “Electrical conductivity and thermodynamic stability of single walled carbon nanotube using first principles”, NanoTrends (Nano Science and Technology Consortium), vol. 11, pp. 18-21, 2011

Publisher : NanoTrends

Year : 2011

Determination of Protein Subcellular Locations using Support Vector Machines

Cite this Research Publication : M. G. Nirmal, K Gopal, V., and Namboori, P. K., “Determination of Protein Subcellular Locations using Support Vector Machines”, Journal of Computational Intelligence in Bioinformatics, vol. 4, pp. 29-35, 2011.

Publisher : Journal of Computational Intelligence in Bioinformatics

Year : 2011

Computational modeling and simulation of nanomolecular switch for Alzheimer’s disease (A gene silencing technique)

Cite this Research Publication : K. U. Radhagayathri, Mohandas, V. P., Subeesh, T., Dr. Deepa Gopakumar O. S., P. K. Krishnan Namboori, and Ramachandran, K. I., “Computational modeling and simulation of nanomolecular switch for Alzheimer's disease (A gene silencing technique)”, International Journal of Nanoscience, vol. 10, pp. 319-322, 2011

Publisher : International Journal of Nanoscience

Year : 2010

Insilico Analysis of Pac-1 as an Enhancer for Caspase-3 to Promote Apoptosis in Cancer

Cite this Research Publication : M. S. Kumar, Purushothaman, D., K Gopal, V., Premkumar, P., Gopakumar, D., and P. K. Krishnan Namboori, “Insilico Analysis of PAC-1 as an Enhancer for Caspase-3 to Promote Apoptosis”, International Journal of Biotechnology and Biochemistry, vol. 6, pp. 595–600, 2010

Publisher : National Conference on Recent Trends in Communication, Computation and Signal Processing

Year : 2010

Insilico Analysis of PAC-1 as an Enhancer for Caspase-3 to Promote Apoptosis

Cite this Research Publication : M. S. Kumar, Purushothaman, D., K Gopal, V., Premkumar, P., Gopakumar, D., and P. K. Krishnan Namboori, “Insilico Analysis of PAC-1 as an Enhancer for Caspase-3 to Promote Apoptosis”, International Journal of Biotechnology and Biochemistry, vol. 6, pp. 595–600, 2010.

Publisher : International Journal of Biotechnology and Biochemistry

Year : 2010

Effect of Non-Coding RNA on Post-Transcriptional Gene Silencing of Alzheimer Disease

Cite this Research Publication : D. Gopakumar, Mohan, A., Radhagayathri, K. U., Gopal, V., Vasavi, C. S., Premkumar, P., P. K. Krishnan Namboori, and Ramachandran, K. I., “Effect of Non-Coding RNA on Post-Transcriptional Gene Silencing of Alzheimer Disease”, Nature Precedings, 2010.

Publisher : Nature Precedings

Year : 2010

Designing a Drug Additive Against Antibiotic Resistant Gram- positive Bacteria

Cite this Research Publication : V. Aghila, Lainu, K. L., Mohan, A., Radhagayathri, K. U., K Gopal, V., Krishnan, N. P. K., and Gopakumar, D., “Designing a Drug Additive Against Antibiotic Resistant Gram- positive Bacteria”, International Journal of Biotechnology and Bioengineering Research, vol. 1, pp. 53–61, 2010.

Publisher : International Journal of Biotechnology and Bioengineering Research

Conference Paper

Year : 2018

Deep Convolution Network Based Prediction Model for Medical Diagnosis of Lung Cancer – A Deep Pharmacogenomic Approach : Deep diagnosis for lung cancer

Cite this Research Publication : A. Iyer, Vyshnavi, H. A. M., and Namboori, P. K., “Deep Convolution Network Based Prediction Model for Medical Diagnosis of Lung Cancer - A Deep Pharmacogenomic Approach : Deep diagnosis for lung cancer”, in Proceedings of 2018 2nd International Conference on Advances in Electronics, Computers and Communications, ICAECC 2018, 2018.

Publisher : Proceedings of 2018 2nd International Conference on Advances in Electronics, Computers and Communications, ICAECC 2018, Institute of Electrical and Electronics Engineers .

Year : 2012

Proton channels to control H1N1 infections-a computational analysis

Cite this Research Publication : V. Rohith, Anson, T. A., Deepak, O. M., Aravind, K., and Krishnan, N. P. K., “Proton channels to control H1N1 infections-a computational analysis”, in Bioindica-2012, University of Kerala, Trivandrum, 2012.

Publisher : University of Kerala

Year : 2011

Investigating multi target drug action of aloe vera using computational analysis

Cite this Research Publication : S. Ca Pillai, P. K. Krishnan Namboori, Kumar, N. C. Ab, Gopal, K. Vb, Kumar, A. Sb, and Bharath, Pb, “Investigating multi target drug action of aloe vera using computational analysis”, in Proceedings - 2011 2nd National Conference on Emerging Trends and Applications in Computer Science, NCETACS-2011, Shillong, 2011, pp. 174-177

Publisher : Proceedings - 2011 2nd National Conference on Emerging Trends and Applications in Computer Science, NCETACS-2011

Year : 2011

Computational study on metabolomic consequences of antifolate drug treatment and resistance in malarial organisms

Cite this Research Publication : P. Da Balakrishnan, P. K. Krishnan Namboori, Devi, R. Rb, Gopal, K. Vb, and Kumar, A. Sb, “Computational study on metabolomic consequences of antifolate drug treatment and resistance in malarial organisms”, in ICECT 2011 - 2011 3rd International Conference on Electronics Computer Technology, Kanyakumari, 2011, vol. 4, pp. 75-78.

Publisher : ICECT 2011 - 2011 3rd International Conference on Electronics Computer Technology

Year : 2010

Quantum mechanical characterization of Single Walled Carbon Nanotube (SWCNT) to evaluate stability and conductivity

Cite this Research Publication : A. Ranganath, Ashish, G., K. Gopal, V., Kutty, K. N., P. K. Krishnan Namboori, and Gopakumar, D., “Quantum mechanical characterization of Single Walled Carbon Nanotube (SWCNT) to evaluate stability and conductivity”, in ACE 2010 - 2010 International Conference on Advances in Computer Engineering, Bangalore, 2010, pp. 39-42.

Publisher : ACE 2010 - 2010 International Conference on Advances in Computer Engineering

Year : 2010

Insilico Stability Analysis of Human and E.Coli Aquaporins Based on Monte Carlo Simulation Technique

Cite this Research Publication : S. M. Sabu, Suchitra, M. S., Mohan, A., Purushothaman, D., R Devi, R., and Krishnan, N. P. K., “Insilico Stability Analysis of Human and E.Coli Aquaporins Based on Monte Carlo Simulation Technique”, in National Conference on Recent Trends in Communication, Computation and Signal Processing, Coimbatore, 2010.

Publisher : National Conference on Recent Trends in Communication, Computation and Signal Processing

Year : 2010

Insilico analysis of Single Walled Carbon Nanotube (SWCNT) to assess its stability and conductivity

Cite this Research Publication : A. Ranganath, Ashish, G., Sathyamoorthy, S., M Dharan, B., Ayyalusamy, S. Kumar, and Krishnan, N. P. K., “Insilico analysis of Single Walled Carbon Nanotube (SWCNT) to assess its stability and conductivity”, in National Conference on Recent Trends in Communication, Computation and Signal Processing, 2010.

Publisher : IETE-Computer Society of India

Year : 2010

In-Silico Analysis Of Nano Polyamidoamine (PAMAM) Dendrimers

Cite this Research Publication : C. S. Vasavi, Krishnan, N. P. K., Ramakrishnan, S., Cherry, S. Anna, and Anjitha, P. S., “In-Silico Analysis Of Nano Polyamidoamine (PAMAM) Dendrimers”, in International Conference on Nano science and Technology, IIT, Bombay, 2010.

Publisher : IIT

Year : 2010

In-silico analysis of Aquaporin

Cite this Research Publication : Varun gopal.K, Praveen Babu.J., Namboori.P.K., Radhagayathri.K.U., Vasavi.C.S., Premkumar.P., In-Silico Analysis of Aquaporin, Bioinformatica Indica, University of Kerala, Trivandrum (2010)

Publisher : Bioinformatica Indica 2010

Year : 2010

Computational Modeling of Liquid Crystal Polymers (LCP)

Cite this Research Publication : M. B. Abhayalakshmi, Anjali, A. E., Anjali, A. E., Narayanan, P., Hainsanka, V., and Krishnan, N. P. K., “Computational Modeling of Liquid Crystal Polymers (LCP)”, in National Conference on Recent Trends in Communication, Computation and Signal Processing, Coimbaore, 2010.

Publisher : National Conference on Recent Trends in Communication, Computation and Signal Processing

Year : 2010

Barrier Properties of Dna-Protein Bio-Nanopores Using Monte Carlo Simulation Technique

Cite this Research Publication : S. M Sabu, Suchithra, M. S., Radhagayathri, K. U., Sathyamoorthy, S., M Dharan, B., Ayyalusamy, S. Kumar, Krishnan, N. P. K., and Gopakumar, D., “Barrier Properties of Dna-Protein Bio-Nanopores Using Monte Carlo Simulation Technique”, in IEEE Tech symbosium, IIT Kharatpur, 2010, 2010.



Publisher : IIT Kharatpur

Year : 2010

Thermal Analysis of Nanofluids Using Modeling and Molecular Dynamics Simulation

Cite this Research Publication : V. K Gopal, Vasavi, C. S., Sabarish Narayanan B., Ramachandran, K. I., Gopakumar, D., and P. K. Krishnan Namboori, “Thermal Analysis of Nanofluids Using Modeling and Molecular Dynamics Simulation”, in International Conference on Artificial Neural Networks, 2009.

Publisher : AIP Publishing

Year : 2009

Thermal Analysis of Nanofluids Using Modeling and Molecular Dynamics Simulation

Cite this Research Publication : V. K Gopal, Vasavi, C. S., Sabarish Narayanan B., Ramachandran, K. I., Gopakumar, D., and P. K. Krishnan Namboori, “Thermal Analysis of Nanofluids Using Modeling and Molecular Dynamics Simulation”, in International Conference on Artificial Neural Networks, 2009.

Publisher : AIP Publishing

Year : 2009

Theoretical modeling of aluminium nanofluid to predict chemo-mechanical properties

Cite this Research Publication : A. Prakash, Arun, K. V., Rahul, M., Praveen, T. S., and P. K. Krishnan Namboori, “Theoretical modeling of aluminium nanofluid to predict chemo-mechanical properties”, in Conference Proceedings RTCSP, Amrita Vishwa Vidyapeetham, Coimbatore, 2009.

Publisher : Amrita Vishwa Vidyapeetham

Year : 2009

Computational Modeling and Simulation of Biomolecular Motors

Cite this Research Publication : Shwetha M, Madathil Suchitra, Vasavi.CS, Radhagayathri K.U, Krishnan Namboori P.K, Deepa Gopakumar, Computational Modeling and Simulation of Biomolecular Motors, International Conference on Advances in Computing,Control, and Telecommunication Technologies, p.130-134, 2009.

Publisher : Advances in Computing, Control, and Telecommunication Technologies

Year : 2009

Characterizing properties of gold nanoparticles by molecular modeling and simulation techniques

Cite this Research Publication : P. M. Rajasree and P. K. Krishnan Namboori, “Characterizing properties of gold nanoparticles by molecular modeling and simulation techniques”, in Conference Proceedings RTCSP, Amrita Vishwa Vidyapeetham, Coimbatore, 2009.

Publisher : Amrita Vishwa Vidyapeetham

Year : 2009

In-silico characterization of multi walled carbon nanotubes (MWCNTS) to develop gas sensors

Cite this Research Publication : Premkumar.P, Krishnan Namboori P.K., V.P. Mohandas, K.U. Radhagayathri and Deepa Gopakumar, In-Silico Characterization of Multi Walled Carbon Nanotubes (Mwcnts) to Develop Gas Sensors, International Conference on Advanced Nanomaterials and Nanotechnology, 2009, vol. 1276, pp. 302-306

Publisher : AIP Conference Proceedings

Conference Proceedings

Year : 2010

Machine learning approaches to determine the drug-likeness of the proteomic targets

Cite this Research Publication : P. Harilal, A Krishna, S., K Gopal, V., Jiyesh, M. M., Sankaranarayanan, A., and P. K. Krishnan Namboori, “Machine learning approaches to determine the drug-likeness of the proteomic targets”, International Conference on Control Communication and Power Engineering - ACEEE. pp. 253-255, 2010.

Publisher : International Conference on Control Communication and Power Engineering - ACEEE

Year : 2010

Biomolecular motor proteins as targets for cancer treatment- a computational study

Cite this Research Publication : Ca Venkittarayan, a, J., Gopal, VaMadan, Kartikkumar, Ra, Nitin, B. Sa, Madan, Na, Rajamani, Kb, Dr. Krishnashree Achuthan, Bijlani, Bb, and Rao R. Bhavani, “Virtual soldering environment using touch and gesture for engineering labs education”, in TechSym 2010 - Proceedings of the 2010 IEEE Students' Technology Symposium, Kharagpur, 2010, pp. 206-210.

Publisher : TechSym 2010 - Proceedings of the 2010 IEEE Students' Technology Symposium

Book Chapter

Year : 2011

Computational Characterization of CNT-Papain Interactions for Developing a Biosensor

Cite this Research Publication : C. R. Athira, Shilpa, S., Parvathy, C. M., Nithya, S., Vinothaa, V., Subashini, S. P., K Gopal, V., Parimalam, B., and P. K. Krishnan Namboori, “Computational Characterization of CNT-Papain Interactions for Developing a Biosensor”, in Computer Networks and Information Technologies, Springer, 2011, pp. 553–556

Publisher : Springer

Year : 2010

Homology Modeling and Protein Ligand Interaction to Identify Potential Inhibitor for E1 Protein of Chikungunya

Cite this Research Publication : C. S. Vasavi, R Devi, R., Anand, L., Varma, M. P., P. K. Krishnan Namboori, and , “Homology Modeling and Protein Ligand Interaction to Identify Potential Inhibitor for E1 Protein of Chikungunya”, in Information and Communication Technologies, Springer, 2010.

Publisher : Springer

Year : 2010

Designing a Promotor for a Novel Target Site Identified in Caspases for Initiating Apoptosis in Cancer Cells

Cite this Research Publication : M. S. Kumar, Lainu, K. L., Aghila, V., Purushothaman, D., K Gopal, V., P. K. Krishnan Namboori, and Harishankar, V., “Designing a Promotor for a Novel Target Site Identified in Caspases for Initiating Apoptosis in Cancer Cells”, in Information and Communication Technologies, Springer, 2010, pp. 62-67

Publisher : Springer

Book

Year : 2014

Bioinformatics Structural and Sequence Analysis

Cite this Research Publication : D. Gopakumar and P. K. Krishnan Namboori, Bioinformatics Structural and Sequence Analysis. New Delhi: Narosa Publishers, 2014

Publisher : Narosa Publishers

Year : 2008

Computational Chemistry and Molecular Modeling

Cite this Research Publication : Dr. K. I. Ramachandran, Deepa, G., and P. K. Krishnan Namboori, Computational Chemistry and Molecular Modeling. Springer, 2008.

Publisher : Computational Chemistry and Molecular Modeling: Principles and Applications

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