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Course Detail

Course Name Molecular Diagnostics
Course Code 24MMD343
Program B. Sc. Honors (with Research) in Molecular Medicine
Semester 6
Credits 3
Campus Kochi

Syllabus

Preamble

Molecular diagnostics has revolutionized healthcare by providing highly sensitive and specific methods for diagnosing diseases. Building upon the foundational knowledge of molecular biology and methods, this course delves into the practical applications of these techniques in a clinical setting. Students will explore diverse molecular diagnostic assays used to detect pathogens, diagnose genetic disorders, and guide personalized medicine approaches.

Unit 1

Introduction to Advanced Molecular Diagnostics: Overview of Advanced Molecular Diagnostics. Historical Perspective and Recent Advances.

Nucleic Acid Extraction: Methods for isolating high-quality DNA or RNA from blood, saliva, cerebrospinal fluid (CSF), tissues, and other clinical samples.

Unit 2

Advanced Applications and Future Trends: Introduction to next-generation sequencing (NGS) in molecular diagnostics. Microarrays for large-scale gene expression profiling and disease diagnosis.

Unit 3

Molecular diagnostics in oncology: Identification of cancer-causing mutations, targeted therapies). Future directions in molecular diagnostics (e.g., liquid biopsies, digital PCR).

Unit 4

Applications in Infectious Diseases: Molecular diagnosis of bacterial, viral, parasitic, and fungal infections. Antibiotic resistance testing using molecular assays (PCR, Sanger sequencing for specific resistance genes and NGS based resistance detection). Emerging infectious diseases and their molecular diagnostic strategies (e.g., COVID-19 diagnostics).

Unit 5

Applications in Genetic Disorders: Prenatal diagnosis of genetic diseases using chorionic villus sampling (CVS) or amniocentesis coupled with molecular techniques. Carrier testing for inherited diseases using mutation analysis. Pharmacogenomics and personalized medicine based on individual genetic variations.

Objectives and Outcomes

  • Molecular Biology (assumed knowledge of macromolecules, gene structure, replication, transcription, translation)
  • Molecular Methods (assumed knowledge of PCR principles, types, applications, primer design)

 Course Outcome

CO1 Demonstrate a comprehensive understanding of advanced molecular diagnostic techniques.

CO2 Understand advanced molecular diagnostic methods to diagnose various diseases, including oncological and infectious diseases.

CO3 Evaluate future trends and emerging technologies in molecular diagnostics.

CO4 Design molecular diagnostic strategies for personalized medicine and genetic disorder management.

CO5 Communicate scientific findings and concepts related to advanced molecular diagnostics effectively.

Program Outcome

PO1: Bioscience Knowledge

PO2: Problem Analysis

PO3: Design/Development of Solutions

PO4: Conduct Investigations of complex problems

PO5: Modern tools usage

PO6: Bioscientist and Society

PO7: Environment and Sustainability

PO8: Ethics

PO9: Individual & Team work

PO10: Communication

PO11: Project management & Finance

PO12: Lifelong learning

c

C O

PO1

PO2

PO3

PO4

PO5

PO6

PO7

PO8

PO9

PO10

PO11

PO12

CO 1

3

2

2

2

3

1

2

3

CO 2

3

2

2

2

3

1

1

2

3

CO 3

3

2

2

2

3

1

2

3

CO 4

3

2

2

2

3

1

2

3

CO 5

3

2

2

2

3

1

3

3

 

Program Specific Outcomes. (PSO)

PSO 1 – Chemical and physical basis of biology

PSO 2 – Computational science in biology and medicine

PSO 3 – Biochemical and physiological complexity in biology and medicine

PSO 4 – Molecular technology in biology and medicine

PSO 5 – Cell based approaches in diagnosis and therapy

PSO 6 – Microorganisms in medicine

PSO 7 – Nanoscale entities and its significance in medicine

PSO 8 – Tissue architecture engineering in medicine

PSO 9 – Compounds as drugs and its efficacy

PSO 10 – Bioinformatics and artificial intelligence in medicine

PSO 11 –Technology in personalizing medicine

PSO 12 – Protein structural complexity in medicine

PSO 13 – Projecting science and medicine to public

C O

PSO1

PSO2

PSO3

PSO4

PSO5

PSO6

PSO7

PSO8

PSO9

PSO10

PSO11

PSO12

PSO13

CO 1

1

3

3

1

CO 2

1

3

3

3

1

2

3

3

1

CO 3

1

2

3

1

3

1

CO 4

1

3

3

3

1

CO 5

1

3

2

3

1

Evaluation Pattern

Internal Assessment – 50% 

Periodical 1 

Exam 

20% 

Periodical 2 

Exam 

20% 

Continuous Assessment 

Assignment/Test/Quiz

10% 

50%

End Semester Examination- 50% 

Theory Exam 

50% 

50%

Total

100%

Text Books / References

Molecular Diagnostics: For the Clinical Laboratorian. William B. Coleman (Editor), Gregory J. Tsongalis (Editor) Publisher: Springer-Verlag New York, LLC.

Buckingham and Flaw’s, “Molecular Diagnostics: Fundamentals, Methods and Clinical Applications”, F.A. Davis Company; First edition, 2007.

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